That's interesting. I didn't set this up on our system, but if the LDAP can tell Galaxy the real username, maybe we can avoid having to setup username@example.org aliases and insisting our users do that for logging into Galaxy. Hopefully some other SGE users can comment on how they got the run-as-user system working for them? Peter On Mon, Apr 10, 2017 at 3:43 PM, Matthias Bernt <m.bernt@ufz.de> wrote:
Hi,
sorry, I forgot this central piece of information: We also use Univa Grid Engine.
What would be easier adapting galaxy's mapping to users or setting up email aliases? I would need to ask our cluster admins if they could realize this.
Best, Matthias
On 10.04.2017 16:39, Peter Cock wrote:
This may depend on the cluster setup, and how Galaxy accesses it. What are you using?
We use SGE (actually Univa Grid Engine) via DRMAA, and had to setup username@example.org email aliases just for this.
Peter
On Mon, Apr 10, 2017 at 3:36 PM, Matthias Bernt <m.bernt@ufz.de> wrote:
Dear list,
I'm just starting to get jobs submitted to our cluster as real system user. I read in the documentation that the name of the system user is determined by "the Galaxy user's email address (with the @domain stripped off)". But this does not work on our system, rather the username stored in the galaxy_user table is the name of the user (this is correctly generated by the LDAP login).
The job runner script seems to get the user id, so I guess I need to dig deeper. So my question is: Where could I change this behavior?
Thanks a lot.
Cheers, Matthias
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------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
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------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------