On Fri, Aug 12, 2011 at 5:36 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:

On Thu, Aug 11, 2011 at 4:11 PM, Jeremy Goecks <jeremy.goecks@emory.edu> wrote:
>>> *The tool should work with general fasta files right now,
>>> so the changes needed to support protein and other
>>> fastas should be UI-based only.
>>
>> Right, while of course preserving the (now misleading) tool
>> ID of "Extract genomic DNA 1" and filename of
>> extract/extract_genomic_dna.xml for backwards
>> compatibility.
>
> Only the tool ID is required for backwards compatibility; the filename can be changed.

OK.

First, some minor house keeping - if you can clarify the text
for how a user should go from a tabular file to an interval or
GFF file, that would be good:

https://bitbucket.org/peterjc/galaxy-central/changeset/d41ee8c41532

Could you transplant/merge that please? Its the only commit
so far on my new branch:

https://bitbucket.org/peterjc/galaxy-central/src/extract_region

Regards,

Peter

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