Maybe I should retitle this thread... On Mon, Aug 12, 2013 at 3:43 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Mon, Aug 12, 2013 at 3:10 PM, Bjoern Gruening <bjoern.gruening@gmail.com> wrote:
Ok reverted it! Its now to a normal bash definition and I removed the atlas and lapack definitions. So it should build but it has performance regressions.
If the new galaxy stable is out, I will upload the new version. Hope it builds now for you.
Bjoern
Thank you - installing the NumPy package now works for me, http://toolshed.g2.bx.psu.edu/view/iuc/package_numpy_1_7
I'm moving on to something odd with matplotlib instead...
Peter
There are currently two revisions to the main Tool Shed package for numpy, http://toolshed.g2.bx.psu.edu/view/iuc/package_numpy_1_7 Rev 0: c75482be1d3a - needs not-yet-released features Rev 1: 74c21f9bdc39 - simplified I'm trying to install a package dependent on this via matplotlib - but installing the matplotlib package fails: http://toolshed.g2.bx.psu.edu/view/iuc/package_matplotlib_1_2 This is something odd, why does it think it needs to install the rev 0 c75482be1d3a version of package_numpy_1_7? See screenshot, except here: Repository dependencies - installation of these additional repositories is required Name Revision Owner Installation status package_freetype_2_4 8761091302c4 iuc Installed package_numpy_1_7 74c21f9bdc39 iuc Installed package_numpy_1_7 c75482be1d3a iuc Uninstalled Yes, the matplotlib tool_dependencies.xml does list the original revision: <package name="numpy" version="1.7.1"> <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="freetype" version="2.4.11"> <repository changeset_revision="8761091302c4" name="package_freetype_2_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> But I thought as a "Tool dependency definition" only the tip revision is ever used? After attempting to install this, the status is "Installed, missing repository dependencies" and this oddity about wanting two revisions of NumPy persists. The actual failure appears to be in compiling matplotlib itself... I don't think it is finding the NumPy installation. Is it possible to view the INSTALLATION.log from within the Galaxy Admin web interface? Should I just email that too? Peter
