Hello,
I installed FastQC (~/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/FastQC ).

However, I got the following error while running it:

Fatal error: Exit code 1 () Traceback (most recent call last): File "/home/lorencm/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/fastqc/rgFastQC.py", line 157, in <module> assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable AssertionError: ##rgFastQC.py error - cannot find executable /fastqc

The Fastqc package seems to be correctly installed:

~/galaxy/tool_dependency/FastQC/0.11.2/devteam/package_fastqc_0_11_2/4b65f6e39cb0 > ls -1 -ahl
total 824K
drwxrwxr-x 8 lorencm lorencm 4.0K Nov 4 02:21 .
drwxrwxr-x 3 lorencm lorencm 4.0K Nov 4 02:21 ..
drwxrwxr-x 2 lorencm lorencm 4.0K Nov 4 02:21 Configuration
-rwxrwxr-x 1 lorencm lorencm 251 Nov 4 02:21 env.sh
-rwxr-xr-x 1 lorencm lorencm 13K Nov 4 02:21 fastqc
-rw-rw-r-- 1 lorencm lorencm 2.2K Nov 4 02:21 fastqc_icon.ico
drwxrwxr-x 5 lorencm lorencm 4.0K Nov 4 02:21 Help
-rw-rw-r-- 1 lorencm lorencm 5.5K Nov 4 02:21 INSTALL.txt
-rw-rw-r-- 1 lorencm lorencm 49K Nov 4 02:21 jbzip2-0.9.jar
-rw-rw-r-- 1 lorencm lorencm 35K Nov 4 02:21 LICENSE.txt
drwxrwxr-x 3 lorencm lorencm 4.0K Nov 4 02:21 net
drwxrwxr-x 3 lorencm lorencm 4.0K Nov 4 02:21 org
-rw-rw-r-- 1 lorencm lorencm 2.1K Nov 4 02:21 README.txt
-rw-rw-r-- 1 lorencm lorencm 32K Nov 4 02:21 RELEASE_NOTES.txt
-rw-rw-r-- 1 lorencm lorencm 101 Nov 4 02:21 run_fastqc.bat
-rw-rw-r-- 1 lorencm lorencm 630K Nov 4 02:21 sam-1.103.jar
drwxrwxr-x 3 lorencm lorencm 4.0K Nov 4 02:21 Templates
drwxrwxr-x 3 lorencm lorencm 4.0K Nov 4 02:21 uk

What do I miss out?

Thank you in advance.

Mic