Dear Peter Thank you for your email. Yes. This is the file type I mean. Sorry for the typo. Any chance there is a pretty class with appropriate sniff functions etc. somewhere? Currently it looks a little bit like a hack on my side. Thanks a lot for your help Ulf On 11/09/13 10:16, Peter Cock wrote:
On Wed, Sep 11, 2013 at 9:46 AM, Ulf Schaefer <Ulf.Schaefer@phe.gov.uk> wrote:
Hello all
Has anyone successfully integrated the phylib file type into Galaxy in their local install? It's a standard file type for multiple sequence alignment and I could not possibly be the only one who want to support it in a local install.
Do you mean phylip with a p at the end? If so try this: http://toolshed.g2.bx.psu.edu/view/devteam/emboss_datatypes http://emboss.sourceforge.net/docs/themes/SequenceFormats.html
Note however there are both strict and relaxed interpretations of the PHYLIP standard (the original version imposed taxon name limits), and also both interlaced/interleaved and sequential forms.
The EMBOSS repository has "phylipnon" for non-interleaved (i.e. sequential) PHYLIP format , and "phylip" for either.
Peter
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