Thanks Damion

We've got the collectl based metric collection stuff working and that dumps data in the Galaxy DB (which you can pull out using the API).


On 17 March 2016 at 10:45, Dooley, Damion <> wrote:
If you are looking for a simple python program to log cpu% and memory of
another executable, then might do.  Its in
along with a few scripts that show examples of its use.

>> On 02/21/2016 11:13 PM, Peter van Heusden wrote:
>> Hi there
>> We're researching the resource (CPU time and memory) requirements for
>> STAR at the moment. Specifically, we'd like to build up a database of
>> size to resource usage so that we can use this to feed a dynamic
>> destination mapper (currently our STAR configuration uses a thumbsuck
>> RAM and CPU requirements that is not optimal but works in many cases).
>> Has anyone collected these metrics before? And more generally, is anyone
>> collecting metrics for a range of bioinformatics tools? A database like
>> this could be very useful!
>> Thanks!
>> Peter

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