The tool to fetch data isn't being run on your submit node but instead on the cluster, which is the problem. 

It's a fairly easy to solve problem:
Something like this (untested, probably invalid xml... )

<plugins workers="4">
  <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" />
  <!-- your torque runner here -->
</plugins>
<destinations default="cluster">
  <destination id="local" runner="local">
  <!-- your cluster dest here -->
</destinations>
<tools>

  <!-- we force the upload tool to the local job runner, thereby bypassing the issue of internet access on the cluster nodes -->
  <tool id="upload1" destination="local" />
</tools>

Cheers,
Eric

2015-01-22 13:51 GMT-06:00 Fernandez Edgar <edgar.fernandez@umontreal.ca>:

Hello gents,

 

I started this new thread because I have a showstopper for my installation of galaxy.

Here’s my situation:

1.       I have a galaxy server that has internet access.

2.       My galaxy server is also my torque server and my only torque submit node.

3.       I have three torque compute nodes that DOESN’T have internet access.

 

Now, I’ve tried uploading a file (larger than 2Gb) via and URL and it fails.

However, I’ve added my galaxy server as a compute node and re-tried to upload the same file and I made sure the job will run on that machine and it works.

 

Now, my compute nodes are in a network that is completely protected from the outside world.

So no internet access.

 

What are my option in this case?

 

Cordialement / Regards,

 

Edgar Fernandez

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la Communication

(  Bur. : 1-514-343-6111 poste 16568

 

Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-218

 


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/



--
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
esr@tamu.edu
rasche.eric@yandex.ru