In order to test that, I've just downloaded a new galaxy-central and configured it to submit jobs in our SGE cluster. Same problem. The job starts and finishes, but galaxy keeps informing it's still running.
I've also attached the job_conf.xml file. 
Need help, please!
-Adhemar


galaxy.jobs.runners ERROR 2013-10-08 15:29:16,721 Unhandled exception checking active jobs
Traceback (most recent call last):
  File "/opt/bioinformatics/share/galaxy20131008/lib/galaxy/jobs/runners/__init__.py", line 362, in monitor
    self.check_watched_items()
  File "/opt/bioinformatics/share/galaxy20131008/lib/galaxy/jobs/runners/drmaa.py", line 217, in check_watched_items
    log.warning( "(%s/%s) job check resulted in %s: %s", galaxy_id_tag, external_job_id, e.__class__.name, e )
AttributeError: type object 'InvalidJobException' has no attribute 'name'



<?xml version="1.0"?>
<job_conf>
    <plugins workers="10">
        <!-- <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="10"/> -->
        <plugin id="sge" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="10"/>
    </plugins>
    <handlers default="handlers">
        <handler id="main"/>
        <handler id="handler0" tags="handlers"/>
        <handler id="handler1" tags="handlers"/>
        <handler id="handler2" tags="handlers"/>
        <handler id="handler3" tags="handlers"/>
        <handler id="handler4" tags="handlers"/>
        <handler id="handler5" tags="handlers"/>
        <handler id="handler6" tags="handlers"/>
        <handler id="handler7" tags="handlers"/>
        <handler id="handler8" tags="handlers"/>
        <handler id="handler9" tags="handlers"/>
    </handlers>
    <destinations default="sge_cluster">
        <!--
        <destination id="local" runner="local"/> 
        -->
        <destination id="sge_cluster" runner="sge" tags="longjobs">
            <param id="nativeSpecification">-V -q galaxy.q</param>
        </destination>
    </destinations>
</job_conf>







2013/10/8 Adhemar <azneto@gmail.com>
Hi,
After the last update I'm getting the following error. 
The job is submitted to SGE e executed, but galaxy doesn't get the result and keeps showing the job is executing (yellow box).
Any clues?
Thanks,
Adhemar



galaxy.jobs.runners ERROR 2013-10-08 13:01:18,488 Unhandled exception checking active jobs
Traceback (most recent call last):
  File "/opt/bioinformatics/share/galaxy20130410/lib/galaxy/jobs/runners/__init__.py", line 362, in monitor
    self.check_watched_items()
  File "/opt/bioinformatics/share/galaxy20130410/lib/galaxy/jobs/runners/drmaa.py", line 217, in check_watched_items
    log.warning( "(%s/%s) job check resulted in %s: %s", galaxy_id_tag, external_job_id, e.__class__.name, e )
AttributeError: type object 'InvalidJobException' has no attribute 'name'