There are two alignment summary options in the wrapper that will cause most/all of that to be written to a history item. They're under "Summary Options". Devon -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Thu, Apr 26, 2018 at 2:11 PM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Hi,
I would like to use the info (log) HISAT is showing, for another tool. e.g.: 26781724 reads; of these: 26781724 (100.00%) were unpaired; of these: 2445411 (9.13%) aligned 0 times 20399099 (76.17%) aligned exactly 1 time 3937214 (14.70%) aligned >1 times 90.87% overall alignment rate [bam_sort_core] merging from 21 f
Is it possible to access these logs?
Cheers Jochen ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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