Thanks Peter! The tool id = fasta_filter_by_id has been approved in the Galaxy Tool shed at http://community.g2.bx.psu.edu/ Please let us know if you find any errors, Best, Jen Galaxy team On 12/13/10 7:15 AM, Peter wrote:
On Tue, Dec 7, 2010 at 3:15 PM, Peter<peter@maubp.freeserve.co.uk> wrote:
On Tue, Dec 7, 2010 at 2:48 PM, Jennifer Jackson<jen@bx.psu.edu> wrote:
Hi Peter,
Sorry for the delay, there was some discussion about this. The concept is great, but for now we have decided to leave the functionality as it is now and have users create workflows to do the same task on Galaxy main.
Using the Tool Shed is a great solution for sharing this popular function! I'll keep an eye out and approve it quickly over there.
Thanks Jennifer,
I'll try to wrap up these filter by ID tools as a tool suite then.
Hi Jennifer,
I've just uploaded the FASTA filter by ID script as a tool. I'll try to do the FASTQ and SFF versions shortly.
On reflection, since the SFF filter script will depend on Biopython, it seems simpler in some respects not to bundle it with the first two.
I have been having some trouble with the unit tests for the FASTA filter - I may have found a problem with Galaxy itself... I'm still looking into it.
Peter
-- Jennifer Jackson http://usegalaxy.org