On Jun 22, 2010, at 4:07 PM, Greg Von Kuster wrote:
I see trackster now can take info about chroms from 2bit files (if specified in the proper .loc file)...
I have both .len files (because I used to play with trackster) and .2bit files (specified before using trackster...) but get an error everytime I create a new trackster session:
Could not load chroms for this dbkey
The web log says:
85.239.176.228 - - [23/Jun/2010:14:24:32 +0200] "GET /tracks/chroms?dbkey=Human+Mar.+2006+(NCBI36%2Fhg18)+(hg18) HTTP/1.1" 500 - "
http://host001.instruments.ifom-ieo-campus.it:8080/tracks" "Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10_6_4; en-us) AppleWebKit/533.16 (KHTML, like Gecko) Version/5.0 Safari/533.16"
Error - <type 'exceptions.ValueError'>: need more than 0 values to unpack
File '/data/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__
app_iter = self.application(environ, start_response)
File '/data/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__
return self.application(environ, start_response)
File '/data/galaxy_dist/lib/galaxy/web/framework/middleware/remoteuser.py', line 103 in __call__
return self.app( environ, start_response )
File '/data/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__
return self.application(environ, start_response)
File '/data/galaxy_dist/lib/galaxy/web/framework/base.py', line 126 in __call__
body = method( trans, **kwargs )
File '/data/galaxy_dist/lib/galaxy/web/framework/__init__.py', line 63 in decorator
return simplejson.dumps( func( self, trans, *args, **kwargs ) )
File '/data/galaxy_dist/lib/galaxy/web/controllers/tracks.py', line 186 in chroms
if self.available_genomes is None: self._init_references(trans)
File '/data/galaxy_dist/lib/galaxy/web/controllers/tracks.py', line 104 in _init_references
key, path = line.split()
ValueError: need more than 0 values to unpack
[cut]
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at 0x41e1d90>
paste.cookies: (<SimpleCookie: __utma='113557983.3551959740507082000.1241708833.1259073318.1265196708.48' __utmz='113557983.1265196708.48.7.utmcsr=ieo.it|utmccn=(referral)|utmcmd=referral|utmcct=/ricerca/inglese/researchgroups.shtml' galaxysession='eb142648ac45b7701c30ab67703dc42f0155958d39aa56df8786535502903d5ca958528cf2cfe07e' hguid='91197'>, 'galaxysession=eb142648ac45b7701c30ab67703dc42f0155958d39aa56df8786535502903d5ca958528cf2cfe07e; hguid=91197; __utma=113557983.3551959740507082000.1241708833.1259073318.1265196708.48; __utmz=113557983.1265196708.48.7.utmcsr=ieo.it|utmccn=(referral)|utmcmd=referral|utmcct=/ricerca/inglese/researchgroups.shtml')
paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object at 0x41e1250>
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at 0xd6d390>
paste.parsed_querystring: ([('dbkey', 'Human Mar. 2006 (NCBI36/hg18) (hg18)')], 'dbkey=Human+Mar.+2006+(NCBI36%2Fhg18)+(hg18)')
paste.recursive.forward: <paste.recursive.Forwarder from />
paste.recursive.include: <paste.recursive.Includer from />
paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from />
paste.recursive.script_name: ''
paste.throw_errors: True
webob._parsed_query_vars: (MultiDict([('dbkey', 'Human Mar. 2006 (NCBI36/hg18) (hg18)')]), 'dbkey=Human+Mar.+2006+(NCBI36%2Fhg18)+(hg18)')
wsgi process: 'Multithreaded'
------------------------------------------------------------
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/*