On Thu, May 9, 2013 at 10:49 AM, Peter Cock &lt;<a href="mailto:p.j.a.cock@googlemail.com">p.j.a.cock@googlemail.com</a>&gt; wrote:<br>&gt;<br>&gt; Hi Dave,<br>&gt;<br>&gt; As you hoped, these test now shows up on the tool page (as expected<br>
&gt; they are test failures - apparently my install script isn&#39;t quite right yet):<br>&gt;<br>&gt; ...<br>&gt;<br>&gt; This one is more interesting, and appears to be a problem with the<br>&gt; test framework (both tests pass locally via run_functional_tests.sh):<br>
&gt;<br>&gt; <a href="http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename/16a1a5ae98e9">http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename/16a1a5ae98e9</a><br>&gt; Functional test results for changeset revision 16a1a5ae98e9 of seq_rename<br>
&gt; 0 tests passed, 2 tests failed, 0 tests missing test components.<br>&gt;<br>&gt; I&#39;ll raise that on a new thread,<br><br>Here&#39;s the output from the (Test) Tool Shed where the tests fail:<br><br><table class="tables container-table" id="test_environment" border="0" cellpadding="2" cellspacing="2" width="100%">
<tbody><tr id="folder-ed01147b4aa1e8de" class="folderRow libraryOrFolderRow expanded" style><td style="padding-left:20px"><span class="expandLink folder-ed01147b4aa1e8de-click">
                    <div style="float:left;margin-left:2px" class="expandLink folder-ed01147b4aa1e8de-click">
                        <a class="folder-ed01147b4aa1e8de-click">
                            Tests that failed
                        </a>
                    </div>
                </span>
            </td>
        </tr>
        
            
    
    <tr style="display:table-row" class="datasetRow" id="libraryItem-f9cad7b01a472135">
        <td style="padding-left:60px">
            <table class="grid" id="readme_table">
                <tbody><tr><td bgcolor="#FFFFCC"><b>Tool id:</b> seq_rename</td></tr>
                <tr><td><b>Tool version:</b> seq_rename</td></tr>
                <tr><td><b>Test:</b> test_tool_000000 (<a href="http://functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3">functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3</a>)</td>
</tr>
                <tr><td><b>Stderr:</b> <br></td></tr>
                <tr><td><b>Traceback:</b> <br>Traceback (most recent 
call last):
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py&quot;,
 line 171, in test_tool
    self.do_it( td, shed_tool_id=shed_tool_id )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py&quot;,
 line 78, in do_it
    self.run_tool( <a href="http://testdef.tool.id">testdef.tool.id</a>, repeat_name=repeat_name, 
**page_inputs )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py&quot;,
 line 1320, in run_tool
    self.submit_form( **kwd )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py&quot;,
 line 1270, in submit_form
    raise AssertionError( errmsg )
AssertionError: Attempting to set field &#39;new_column&#39; to value &#39;[&#39;2&#39;]&#39; in
 form &#39;tool_form&#39; threw exception: cannot find value/label &quot;2&quot; in list 
control
control: &lt;SelectControl(new_column=[1])&gt;
If the above control is a DataToolparameter whose data type class does 
not include a sniff() method,
make sure to include a proper &#39;ftype&#39; attribute to the tag for the 
control within the &lt;test&gt; tag set.</td></tr>
            </tbody></table>
        </td>
    </tr>
    

            
    
    <tr style="display:table-row" class="datasetRow" id="libraryItem-c9715d71689bf781">
        <td style="padding-left:60px">
            <table class="grid" id="readme_table">
                <tbody><tr><td bgcolor="#FFFFCC"><b>Tool id:</b> seq_rename</td></tr>
                <tr><td><b>Tool version:</b> seq_rename</td></tr>
                <tr><td><b>Test:</b> test_tool_000001 (<a href="http://functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3">functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3</a>)</td>
</tr>
                <tr><td><b>Stderr:</b> <br></td></tr>
                <tr><td><b>Traceback:</b> <br>Traceback (most recent 
call last):
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py&quot;,
 line 171, in test_tool
    self.do_it( td, shed_tool_id=shed_tool_id )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py&quot;,
 line 78, in do_it
    self.run_tool( <a href="http://testdef.tool.id">testdef.tool.id</a>, repeat_name=repeat_name, 
**page_inputs )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py&quot;,
 line 1320, in run_tool
    self.submit_form( **kwd )
  File 
&quot;/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py&quot;,
 line 1270, in submit_form
    raise AssertionError( errmsg )
AssertionError: Attempting to set field &#39;new_column&#39; to value &#39;[&#39;c2&#39;]&#39; 
in form &#39;tool_form&#39; threw exception: cannot find value/label &quot;c2&quot; in 
list control
control: &lt;SelectControl(new_column=[1])&gt;
If the above control is a DataToolparameter whose data type class does 
not include a sniff() method,
make sure to include a proper &#39;ftype&#39; attribute to the tag for the 
control within the &lt;test&gt; tag set.</td></tr>
            </tbody></table>
        </td>
    </tr>
    




                    </tbody></table>
            
        

    <p>
    </p>
        <div class="toolFormTitle">Both tests fail with the following assertion:<br><br>AssertionError: Attempting to set field &#39;new_column&#39; to value &#39;[&#39;c2&#39;]&#39; 
in form &#39;tool_form&#39; threw exception: cannot find value/label &quot;c2&quot; in 
list control
control: &lt;SelectControl(new_column=[1])&gt;
If the above control is a DataToolparameter whose data type class does 
not include a sniff() method,
make sure to include a proper &#39;ftype&#39; attribute to the tag for the 
control within the &lt;test&gt; tag set.<br><br>Both tests pass on my development machine run via:<br><br>$ ./run_functional_tests.sh -id seq_rename<br><br>The two tests are defined as follows - identical bar the style used for the column arguments - I was wondering if the Tool Shed testing was stricter about numeric column names, but that does not seem to be relevant:<br>
</div><br>    &lt;tests&gt;<br>        &lt;test&gt;<br>            &lt;param name=&quot;input_file&quot; value=&quot;four_human_proteins.fasta&quot; ftype=&quot;fasta&quot; /&gt;<br>            &lt;param name=&quot;input_tabular&quot; value=&quot;four_human_proteins.rename.tabular&quot; ftype=&quot;tabular&quot; /&gt;<br>
            &lt;param name=&quot;old_column&quot; value=&quot;1&quot; /&gt;<br>            &lt;param name=&quot;new_column&quot; value=&quot;2&quot; /&gt;<br>            &lt;output name=&quot;output_file&quot; file=&quot;four_human_proteins.rename.fasta&quot; ftype=&quot;fasta&quot; /&gt;<br>
        &lt;/test&gt;<br>        &lt;test&gt;<br>            &lt;param name=&quot;input_file&quot; value=&quot;four_human_proteins.fasta&quot; ftype=&quot;fasta&quot; /&gt;<br>            &lt;param name=&quot;input_tabular&quot; value=&quot;four_human_proteins.rename.tabular&quot; ftype=&quot;tabular&quot; /&gt;<br>
            &lt;param name=&quot;old_column&quot; value=&quot;c1&quot; /&gt;<br>            &lt;param name=&quot;new_column&quot; value=&quot;c2&quot; /&gt;<br>            &lt;output name=&quot;output_file&quot; file=&quot;four_human_proteins.rename.fasta&quot; ftype=&quot;fasta&quot; /&gt;<br>
        &lt;/test&gt;<br>    &lt;/tests&gt;<br><br>I can retest with the latest galaxy-dist once this issue is resolved:<br><a href="http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014557.html">http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014557.html</a><br>
<br>Peter<br><br>