Hi,
I'm trying to enable the capability to submit jobs to a pbs cluster, however I am quite confused by the documentation. I don't know where I could specify the pbs server. I saw the following on the page:
1 <plugins>
2 <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner"/>
3 </plugins>
4 <destinations default="pbs_default">
5 <destination id="pbs_default" runner="pbs"/>
6 <destination id="other_cluster" runner="pbs">
7 <param id="destination">@other.cluster</param>
8 </destination>
9 <destination id="long_jobs" runner="pbs">
10 <param id="Resource_List">walltime=72:00:00,nodes=1:ppn=8</param>
11 <param id="-p">128</param>
12 </destination>
13 </destinations>
is this <param id="destination"> the place you specify where your pbs/torque server? and the syntax is to prepend a '@' to the server name? for example, should a most basic config look like:
<plugins>
<plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner">
</plugins>
<destinations default="pbs">
<destination id="pbs" runner="pbs" >
<param id="destination">@pbs_server_full_name</param>
<param id="Resource_List">walltime=72:00:00,nodes=1:ppn=8</param>
<param id="-q">myqueue</param>
</destination>
<destinations>
I searched online and to my surprise I didn't find any useful information, or any working sample...please give me a hand guys!
Thanks!
Rui