8 May
2012
8 May
'12
10:09 p.m.
I am generating a pileup of BAM data from the 1000 genomes project using MPileup. I have associated the BAM file with the hg19 genome, but every single reference base in the output appears as an N. Is there some extra step I have to perform when using a BAM file that was not generated from within Galaxy? Many thanks, luce