On Thu, Nov 25, 2010 at 7:05 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
I've started work on an extended 22 column tabular output option from the BLAST tools, covering what I consider to be all the important extra fields available, including the ability to convert from BLAST XML to this 22 column format.
The work in progress is here if anyone wants to look: http://bitbucket.org/peterjc/galaxy-central/changeset/blastplus_nov25
Hello all, I spent the morning tracking down the root of a strange inconsistency in the XML to tabular conversion regarding the percentage and number of identities. My conclusion was this was down to a bug blastp (BLAST 2.2.24+) which I have just contacted the NCBI about. I think this extension to the BLAST+ wrappers to offer an extended tabular output, and to convert from XML to this extended tabular output, is fit for testing now: http://bitbucket.org/peterjc/galaxy-central/changeset/blastplus_nov25 Alex - are you willing to try this out (and comment on it) before I ask for it to be merged to the trunk? Thanks, Peter