Hello Joe,

Can you send me your csv file?

Thanks!

On Jun 7, 2011, at 10:45 AM, Joe Cruz wrote:

Hello Everyone,

I wanted to ask if anyone has experience successfully importing sample information through a csv file.

I know there is an issue already created for csv file import, which I left a comment earlier:

https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-information-is-broken#comment-510683\

but my bug doesn't seem to deal with an 'Invalid Request ID' as the issue above states.

This is the error I get:

URL: http://localhost/requests_common/add_samples?cntrller=requests&id=a65cf3ca8eb85be3
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__
  app_iter = self.application(environ, start_response)
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__
  environ, self.app)
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__
  return self.application(environ, start_response)
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__
  return self.application(environ, start_response)
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/base.py', line 145 in __call__
  body = method( trans, **kwargs )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 84 in decorator
  return func( self, trans, *args, **kwargs )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py', line 829 in add_samples
  return self.__import_samples( trans, cntrller, request, displayable_sample_widgets, libraries, **kwd )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py', line 1109 in __import_samples
  sample_copy_select_field=sample_copy_select_field )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 650 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 661 in fill_template_mako
  return template.render( **data )
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/template.py', line 133 in render
  return runtime._render(self, self.callable_, args, data)
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 364 in _render
  _render_context(template, callable_, context, *args, **_kwargs_for_callable(callable_, data))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 381 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 414 in _exec_template
  callable_(context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/base.mako.py', line 40 in render_body
  __M_writer(unicode(next.body()))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/add_samples.mako.py', line 164 in render_body
  __M_writer(unicode(render_samples_grid( cntrller, request, displayable_sample_widgets, action='edit_samples', adding_new_samples=True, encoded_selected_sample_ids=[], render_buttons=False, grid_header=grid_header )))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/common.mako.py', line 749 in render_render_samples_grid
  sample_widget_history = sample_widget[ 'history' ]
KeyError: 'history'

I greatly appreciate your help and patience.

Thanks,

joe
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

 http://lists.bx.psu.edu/

Greg Von Kuster
Galaxy Development Team
greg@bx.psu.edu