On Wed, Aug 7, 2013 at 5:35 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Aug 7, 2013 at 5:11 PM, Bjoern Gruening <bjoern.gruening@gmail.com> wrote:
Hi Peter,
Now, back in ncbi_blast_plus, I have revised the repository_dependencies.xml to declare this new repository dependency (the revision tag etc is missing to mean the latest version at upload is used):
Mh, I never tried that but I think that will not work. The blast datatypes are ok to be included in repository_dependency.xml but the package_blast_plus needs to be in tool_dependency.xml, imho.
<?xml version="1.0"?> <tool_dependency> <package name="blast+" version="2.2.26+"> <repository name="package_blast_plus_2_2_26" owner="iuc" /> </package> </tool_dependency>
If you have that you do not need to change your tools.
Hopefully I'm correct. Bjoern
I think you're right, certainly that is how this example works: http://toolshed.g2.bx.psu.edu/view/jjohnson/samtools_filter
So I don't need this in my repository_dependencies.xml after all...
Trying this out, http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/949fa0294c0d Thanks Peter