Yes, these alignments were done to ensemble, not UCSC.

---
Regards,
Evan Clark

On November 23, 2016 at 10:38:55 AM EST, Devon Ryan <dpryan@dpryan.com> wrote:
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Are you using the chromosome lengths for the correct organism and
source? GL000192.1 is a contig name used by Ensembl and Gencode (but
not UCSC!) for GRCh37 (aka hg19).

Devon
--
Devon Ryan, Ph.D.
Email: dpryan@dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Wed, Nov 23, 2016 at 4:12 PM, evan clark wrote:
> When attempting to generate a bigwig file I receive this error.
>
> hashMustFindVal: 'GL000192.1' not found Fatal error: Matched on Error Error
> running wigToBigWig.
>
> I have added the chrom len files for galaxy and update the location path but
> an unsure what could be causing this issue.
>
>
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