Hi all,

I do have a version 0.1 wrapper for STAR under our oqtans package, however it is not yet in toolshed.
https://github.com/ratschlab/oqtans_tools/tree/master/STAR/2.3/

​Feel free to comment,
​
​
Vipin | Rätsch Lab

On Wed, Sep 24, 2014 at 4:55 PM, Curtis Hendrickson (Campus) <curtish@uab.edu> wrote:
Bjorn

We'd be interested in this tool, as well. Any idea how close to functional it is?
I see it's only on TEST toolshed, and not on production, at this point.

I don't see any related Trello card when searching on "star"

Regards,
Curtis
Galaxy Admin @ University of Alabama at Birmingham

-----Original Message-----
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Björn Grüning
Sent: Wednesday, September 24, 2014 3:15 PM
To: galaxy-dev@lists.bx.psu.edu; hooverdm@helix.nih.gov >> David Hoover
Subject: Re: [galaxy-dev] tool for STAR RNA-seq aligner

Hi David,

yes there is inital code in the https://testtoolshed.g2.bx.psu.edu/. I think Ross has done some work on it.
The main problem with Star is that is needs special indices (and a lot of it) and it would be great to offer data managers for it.

Cheers,
Bjoern

Am 24.09.2014 um 22:05 schrieb David Hoover:
> Hi,
>
> I am developing a tool for STAR (https://code.google.com/p/rna-star/), and I realize I may be reinventing another wheel.  Has anyone else created a tool for STAR?  There's nothing else in the toolsheds for it yet.
>
> David
>
> --------------------
> David Hoover, PhD
> Helix Systems Staff
> SCB/DCSS/CIT/NIH
> 301-435-2986
> http://helix.nih.gov
>
>
>
>
>
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