On Jul 13, 2012, at 9:05 AM, Iry Witham wrote:
Hi Nate,
I have set this as shown below:
# The URL for the default runner to use when a tool doesn't explicitly define a # runner below. default_cluster_job_runner = pbs:////-l nodes=1:ppn=1,walltime=20:00:00
This should be okay. Could you send along the server output from startup to job completion? --nate
Iry
On 7/12/12 4:29 PM, "Nate Coraor" <nate@bx.psu.edu> wrote:
On Jul 6, 2012, at 12:32 PM, Iry Witham wrote:
I am having an issue with pbs_python loading, but not submitting jobs to the cluster.
The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py e pbs_python' it failed to generate the pbs_python egg in the /galaxy-dist/eggs/ directory.
Secondly I copied the pbs_python-4.1.0-py2.6-linux-x86_64-ucs4.egg from my production galaxy server and restarted my test server. It appears to start, but when I attempt to run anything it uses the local runner and fails. The runner0.log shows the pbsjobrunner is loaded is below:
galaxy.jobs.handler DEBUG 2012-07-06 10:08:45,681 Loaded job runner: galaxy.jobs.runners.pbs:PBSJobRunner galaxy.jobs.handler INFO 2012-07-06 10:08:45,682 job handler stop queue started galaxy.jobs.manager INFO 2012-07-06 10:08:45,687 job manager queue started galaxy.jobs.manager INFO 2012-07-06 10:08:45,688 job manager stop queue started galaxy.jobs.handler INFO 2012-07-06 10:08:45,692 job handler queue started
I can't seem to get past this point since I upgraded. Can someone point me in the right direction?
Hi Iry,
Did you set default_cluster_job_runner in universe_wsgi.ini?
--nate
Thanks, Iry
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