Dear Sir,

          We have a program writen in C lanuage. It can run nomally in linux environment.

           We plan to add it to galaxy, but it did not work.

           The C file after complie named "shortest-path"

             The shortest-path.xml is as follow:

          Could anybody tell me what is wrong ? why it does not work?

           Thank you very much!

 

Best Wishes!

 

Yan-Hui Li

 

 

             <tool id="shortest_path_1" name="shortest_path">

         <command interpreter="C">./shortest_path  $infile1  $output </command>
        <inputs>
                <param format="text" name="infile1" type="data"
                        label="
expressed_genes_20101024.hprd8_biogrid-2.0.58.adj_matrix.txt
                        "/>

        </inputs>
        <outputs>
                <data format="tabular" name="output" />
        </outputs>

        <tests>
                <test>
                        <param name="input" value="1"/>
                        <param name="input" value="../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt"/>
                        <param name="input" value="../ppi/hprd8_biogrid-2.0.58.ppi.txt"/>
                        <output name="out_file1" file="expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt"/>
                </test>
        </tests>

</tool>