tool_shed.galaxy_install.tool_dependencies.recipe.step_handler DEBUG 2015-12-02 23:04:16,463 Successfully downloaded from url: http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,017 checking host system type... x86_64-apple-darwin15.0.0
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,031 loading build-specific script './config.site'
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,049 checking whether builddir is srcdir... yes
checking build system type... x86_64-apple-darwin15.0.0
checking host system type... x86_64-apple-darwin15.0.0
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,221 checking for working autoconf... found
checking for working aclocal... found
checking for working autoconf... found
checking for working automake... found
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,519 checking for working autoheader... found
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for mawk... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for awk... awk
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for bison... bison -y
checking for working autoheader... found
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,557 checking for a BSD-compatible install... /usr/bin/install -c
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,560 checking for which... /usr/bin/which
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,564 checking for gtar... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,565 checking for tar... /usr/bin/tar
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,568 checking for pdftex... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,575 checking for makeindex... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,576 checking for texi2dvi... /usr/bin/texi2dvi
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,580 checking for latex inconsolata package... checking for unzip... /usr/bin/unzip
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,583 checking for gzip... /usr/bin/gzip
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,585 checking for firefox... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,588 checking for galeon... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,591 checking for xdg-open... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,593 checking for gnome-moz-remote... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,595 using default browser ... /usr/bin/open
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,598 checking for acroread4... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,600 checking for evince... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,603 checking for gv... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,606 checking for ggv... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,608 checking for kpdf... no
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,612 checking for notangle... false
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,616 checking for pkg-config... /opt/local/bin/pkg-config
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... no
checking for gnutar... no
checking for tar... /usr/bin/tar
checking for tex... no
checking for pdftex... no
checking for pdflatex... no
checking for makeindex... no
checking for texi2any... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... no
checking for latex inconsolata package... checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /opt/local/bin/bzip2
checking for firefox... no
checking for mozilla... no
checking for galeon... no
checking for opera... no
checking for xdg-open... no
checking for kfmclient... no
checking for gnome-moz-remote... no
checking for open... /usr/bin/open
using default browser ... /usr/bin/open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... no
checking for evince... no
checking for xpdf... no
checking for gv... no
checking for gnome-gv... no
checking for ggv... no
checking for okular... no
checking for kpdf... no
checking for open... /usr/bin/open
checking for notangle... false
checking for realpath... false
checking for pkg-config... /opt/local/bin/pkg-config
checking for gcc... gcc
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
configure: WARNING: you cannot build info or HTML versions of the R manuals
install_environment.STDOUT DEBUG 2015-12-02 23:04:17,810 checking whether the C compiler works... no
checking whether the C compiler works... no
configure: error: in `/Users/hans/galaxy/database/tmp/tmp-toolshed-mtdI4h21b/R-3.2.1':
configure: error: C compiler cannot create executables
See `config.log' for more details