Hi all.<div><br></div><div>When I run the FastQC tool using the default local job runner, it produces a folder of files with permission 664:<div><font size="1" face="&#39;courier new&#39;, monospace">&lt;snip&gt;<br></font><div>

<div><font size="1" face="&#39;courier new&#39;, monospace">-rw-rw-r-- 1 galaxy galaxy  17K Jul  5 17:29 duplication_levels.png</font></div><div><font size="1" face="&#39;courier new&#39;, monospace">-rw-rw-r-- 1 galaxy galaxy 1.6K Jul  5 17:29 error.png</font></div>

<div><font size="1" face="&#39;courier new&#39;, monospace">-rw-rw-r-- 1 galaxy galaxy 7.5K Jul  5 17:29 fastqc_data.txt</font></div></div><div><font size="1" face="&#39;courier new&#39;, monospace">&lt;snip&gt;</font></div>

</div><div><br></div><div>When I switch to using the(local) pbs queue, it produces a folder with permissions 600:</div><div><font size="1" face="&#39;courier new&#39;, monospace">&lt;snip&gt;<br></font><div><div><font size="1" face="&#39;courier new&#39;, monospace">-rw------- 1 galaxy galaxy  15K Jul  6 09:10 duplication_levels.png</font></div>

<div><font size="1" face="&#39;courier new&#39;, monospace">-rw------- 1 galaxy galaxy 1.6K Jul  6 09:10 error.png</font></div><div><font size="1" face="&#39;courier new&#39;, monospace">-rw------- 1 galaxy galaxy 8.8K Jul  6 09:10 fastqc_data.txt</font></div>

<div><span style="font-family:&#39;courier new&#39;,monospace;font-size:x-small">&lt;snip&gt;</span></div></div></div><div><br></div>The final dat file (in database/files/000/dataset_xx.dat) is fine, it&#39;s just the files in the corresponding folder (database/files/000/dataset_xx_files/*) that have the incorrect permissions.<br>

These more restrictive permissions mean that the files cannot be read by apache, resulting a bunch of broken links when viewing the tool&#39;s output.<div><br></div><div>Does anybody know why this might be happening or how to resolve it?</div>

<div><br></div><div>Many thanks.</div><div><br></div><div>-r</div></div>