When running jobs from my admin account via Galaxy it runs under the same user as galaxy is, for testing, this as root. I need for it to run under the real user.
The email address / galaxy account I am using to test with does match with a user on the cluster --
user@example.com where user is a valid user account with correct permissions to run jobs on our cluster and queue.
Any ideas as to why galaxy_external* is not being called? The paster.log file does not show anything useful regarding calling external scripts.