form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['Project-TSS-Participant'], 'input1': ['TCGA-02-0001-01']}
galaxy.jobs: DEBUG: (1) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1 galaxy.jobs.handler: DEBUG: (1) Dispatching to local runner galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///) galaxy.jobs.handler: INFO: (1) Job dispatched galaxy.jobs.runners.local: DEBUG: (1) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project-TSS-Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_1.dat galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///) galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project-TSS-Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_1.dat galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: executing external set_meta script for job 1: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_in_HistoryDatasetAssociation_1_Qthx9v,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_kwds_HistoryDatasetAssociation_1_62Pu99,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_out_HistoryDatasetAssociation_1_835UCN,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_results_HistoryDatasetAssociation_1_9t8UHZ,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_override_HistoryDatasetAssociation_1_og2aRR galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: execution of external set_meta for job 1 finished galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs: DEBUG: job 1 ended galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
Traceback (most recent call last):
File "/usr/lib/python2.7/unittest/case.py", line 332, in run
testMethod()
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 106, in test_tool
self.do_it( td )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 34, in do_it
self._verify_outputs( testdef, test_history, shed_tool_id, data_list, galaxy_interactor )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 67, in _verify_outputs
galaxy_interactor.verify_output( history, output_data, outfile, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/interactor.py", line 312, in verify_output
self.twill_test_case.verify_dataset_correctness( outfile, hid=hid, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 839, in verify_dataset_correctness
self.verify_hid( filename, hid=hid, hda_id=hda_id, attributes=attributes, shed_tool_id=shed_tool_id)
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 852, in verify_hid
local_name = self.get_filename( filename, shed_tool_id=shed_tool_id )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 192, in get_filename
return os.path.abspath( os.path.join( file_dir, filename ) )
File "/usr/lib/python2.7/posixpath.py", line 77, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
-------------------- >> begin captured stdout << ---------------------
form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['Project-TSS-Participant'], 'input1': ['TCGA-02-0001-01']}
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
galaxy.jobs: DEBUG: (1) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1
galaxy.jobs.handler: DEBUG: (1) Dispatching to local runner
galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///)
galaxy.jobs.handler: INFO: (1) Job dispatched
galaxy.jobs.runners.local: DEBUG: (1) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project-TSS-Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_1.dat
galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///)
galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project-TSS-Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_1.dat
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: executing external set_meta script for job 1: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_in_HistoryDatasetAssociation_1_Qthx9v,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_kwds_HistoryDatasetAssociation_1_62Pu99,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_out_HistoryDatasetAssociation_1_835UCN,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_results_HistoryDatasetAssociation_1_9t8UHZ,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/1/metadata_override_HistoryDatasetAssociation_1_og2aRR
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: execution of external set_meta for job 1 finished
galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 1
galaxy.jobs: DEBUG: job 1 ended
galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
--------------------- >> end captured logging << ---------------------
form 'login' contains the following controls ( note the values )
form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['Project TSS: Participant'], 'input1': ['TCGA-02-0001-01']}
galaxy.jobs: DEBUG: (2) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2 galaxy.jobs.handler: DEBUG: (2) Dispatching to local runner galaxy.jobs: DEBUG: (2) Persisting job destination (destination id: local:///) galaxy.jobs.handler: INFO: (2) Job dispatched galaxy.jobs.runners.local: DEBUG: (2) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project TSS: Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_2.dat galaxy.jobs: DEBUG: (2) Persisting job destination (destination id: local:///) galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project TSS: Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_2.dat galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: executing external set_meta script for job 2: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_in_HistoryDatasetAssociation_2_KEyK14,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_kwds_HistoryDatasetAssociation_2_dzeW38,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_out_HistoryDatasetAssociation_2_q_mRXC,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_results_HistoryDatasetAssociation_2_wvf_nR,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_override_HistoryDatasetAssociation_2_4vq_1a galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: execution of external set_meta for job 2 finished galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 2 galaxy.jobs: DEBUG: job 2 ended galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
Traceback (most recent call last):
File "/usr/lib/python2.7/unittest/case.py", line 332, in run
testMethod()
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 106, in test_tool
self.do_it( td )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 34, in do_it
self._verify_outputs( testdef, test_history, shed_tool_id, data_list, galaxy_interactor )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 67, in _verify_outputs
galaxy_interactor.verify_output( history, output_data, outfile, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/interactor.py", line 312, in verify_output
self.twill_test_case.verify_dataset_correctness( outfile, hid=hid, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 839, in verify_dataset_correctness
self.verify_hid( filename, hid=hid, hda_id=hda_id, attributes=attributes, shed_tool_id=shed_tool_id)
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 852, in verify_hid
local_name = self.get_filename( filename, shed_tool_id=shed_tool_id )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 192, in get_filename
return os.path.abspath( os.path.join( file_dir, filename ) )
File "/usr/lib/python2.7/posixpath.py", line 77, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
-------------------- >> begin captured stdout << ---------------------
form 'login' contains the following controls ( note the values )
form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['Project TSS: Participant'], 'input1': ['TCGA-02-0001-01']}
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
galaxy.jobs: DEBUG: (2) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2
galaxy.jobs.handler: DEBUG: (2) Dispatching to local runner
galaxy.jobs: DEBUG: (2) Persisting job destination (destination id: local:///)
galaxy.jobs.handler: INFO: (2) Job dispatched
galaxy.jobs.runners.local: DEBUG: (2) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project TSS: Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_2.dat
galaxy.jobs: DEBUG: (2) Persisting job destination (destination id: local:///)
galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'Project TSS: Participant' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_2.dat
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: executing external set_meta script for job 2: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_in_HistoryDatasetAssociation_2_KEyK14,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_kwds_HistoryDatasetAssociation_2_dzeW38,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_out_HistoryDatasetAssociation_2_q_mRXC,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_results_HistoryDatasetAssociation_2_wvf_nR,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/2/metadata_override_HistoryDatasetAssociation_2_4vq_1a
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: execution of external set_meta for job 2 finished
galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 2
galaxy.jobs: DEBUG: job 2 ended
galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
--------------------- >> end captured logging << ---------------------
form 'login' contains the following controls ( note the values )
form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['MyBarcodeProjectisTSS'], 'input1': ['TCGA-02-0001-01']}
galaxy.jobs: DEBUG: (3) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3 galaxy.jobs.handler: DEBUG: (3) Dispatching to local runner galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local:///) galaxy.jobs.handler: INFO: (3) Job dispatched galaxy.jobs.runners.local: DEBUG: (3) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'MyBarcodeProjectisTSS' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_3.dat galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local:///) galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'MyBarcodeProjectisTSS' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_3.dat galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: executing external set_meta script for job 3: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_in_HistoryDatasetAssociation_3_gjL7eL,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_kwds_HistoryDatasetAssociation_3_HAJHfx,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_out_HistoryDatasetAssociation_3_FFfG0y,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_results_HistoryDatasetAssociation_3_H3oAbh,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_override_HistoryDatasetAssociation_3_uDCpvy galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: execution of external set_meta for job 3 finished galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs: DEBUG: job 3 ended galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
Traceback (most recent call last):
File "/usr/lib/python2.7/unittest/case.py", line 332, in run
testMethod()
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 106, in test_tool
self.do_it( td )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 34, in do_it
self._verify_outputs( testdef, test_history, shed_tool_id, data_list, galaxy_interactor )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/functional/test_toolbox.py", line 67, in _verify_outputs
galaxy_interactor.verify_output( history, output_data, outfile, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/interactor.py", line 312, in verify_output
self.twill_test_case.verify_dataset_correctness( outfile, hid=hid, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 839, in verify_dataset_correctness
self.verify_hid( filename, hid=hid, hda_id=hda_id, attributes=attributes, shed_tool_id=shed_tool_id)
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 852, in verify_hid
local_name = self.get_filename( filename, shed_tool_id=shed_tool_id )
File "/home/janakiram/Documents/Galaxy/galaxy-dist/test/base/twilltestcase.py", line 192, in get_filename
return os.path.abspath( os.path.join( file_dir, filename ) )
File "/usr/lib/python2.7/posixpath.py", line 77, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
-------------------- >> begin captured stdout << ---------------------
form 'login' contains the following controls ( note the values )
form 'tool_form' contains the following controls ( note the values )
page_inputs (0) {'input2': ['MyBarcodeProjectisTSS'], 'input1': ['TCGA-02-0001-01']}
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
galaxy.jobs: DEBUG: (3) Working directory for job is: /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3
galaxy.jobs.handler: DEBUG: (3) Dispatching to local runner
galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local:///)
galaxy.jobs.handler: INFO: (3) Job dispatched
galaxy.jobs.runners.local: DEBUG: (3) executing: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'MyBarcodeProjectisTSS' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_3.dat
galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local:///)
galaxy.jobs.runners.local: DEBUG: execution finished: GALAXY_SLOTS="1"; export GALAXY_SLOTS; python /home/janakiram/Documents/Galaxy/shed_tools/192.168.2.25/repos/janakiram-t1/barcode_parse_13/9580bd34ff69/barcode_parse_13/barcode-parse.py TCGA-02-0001-01 'MyBarcodeProjectisTSS' /tmp/tmpnAJeZy/tmpjmuwS5/database/files/000/dataset_3.dat
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: executing external set_meta script for job 3: /home/janakiram/Documents/Galaxy/galaxy-dist/set_metadata.sh /tmp/tmpnAJeZy/tmpjmuwS5/database/files /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3 . /tmp/tmpnAJeZy/functional_tests_wsgi.ini /tmp/tmpnAJeZy/tmpjmuwS5/new_files_path_Hc9Rfy/tmpWoCXgs /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/galaxy.json /tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_in_HistoryDatasetAssociation_3_gjL7eL,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_kwds_HistoryDatasetAssociation_3_HAJHfx,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_out_HistoryDatasetAssociation_3_FFfG0y,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_results_HistoryDatasetAssociation_3_H3oAbh,,/tmp/tmpnAJeZy/tmpjmuwS5/job_working_directory_Bigg9M/000/3/metadata_override_HistoryDatasetAssociation_3_uDCpvy
galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
galaxy.jobs.runners: DEBUG: execution of external set_meta for job 3 finished
galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 3
galaxy.jobs: DEBUG: job 3 ended
galaxy.datatypes.metadata: DEBUG: Cleaning up external metadata files
--------------------- >> end captured logging << ---------------------