Problem with automation is I could create dozens of templates over the next several years and consume less time in aggregate than it would take me to automate this. Nonetheless, there is a documentation component here that is important so I did enough to document - if someone wants to automate from there feel free. The template is just a copy of the sqlite database after a fresh Galaxy is launched. I usually just do this against whatever development instance of Galaxy I am working on. For completeness though I have put together a script to automate this task against a fresh install (I think): https://github.com/jmchilton/galaxy-downloads/blob/master/build_sqlite_templ... Good luck! -John On Tue, Jul 22, 2014 at 4:13 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Tue, Jul 22, 2014 at 7:41 PM, Eric Rasche <rasche.eric@yandex.ru> wrote:
John,
How are those generated? Would you be amenable to scripting that portion and running it once a month? (...say in a cron job, with a passwordless ssh key so you never have to touch it again)
Cheers, Eric
How to generate it was going to be my next question too ;)
I'm impressed with Eric's zeal to automate things. Having a script for making the SQLite template would be good - under git in the same repository?
Peter
P.S. The schema version 120 template works great, thanks!:
https://travis-ci.org/peterjc/pico_galaxy/builds/30592828 https://travis-ci.org/peterjc/galaxy_blast/builds/30592097