Galaxy type: local<div><br></div><div>I&#39;m trying to get IGV to download files served from the galaxy instance through &quot;display_application&quot;. </div><div>When IGV makes a request for the BAM file, it is re-routed to root like so:</div>

<div><br></div><div><div><font face="&#39;courier new&#39;, monospace" size="1">wget <a href="http://example.org/galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam">http://example.org/galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam</a></font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">--2012-06-22 13:58:00--  http://</font><span style="font-family:&#39;courier new&#39;,monospace;font-size:x-small"><a href="http://example.org">example.org</a></span><font face="&#39;courier new&#39;, monospace" size="1">/galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">Connecting to </font><span style="font-family:&#39;courier new&#39;,monospace;font-size:x-small"><a href="http://example.org">example.org</a></span><font face="&#39;courier new&#39;, monospace" size="1">:80... connected.</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">HTTP request sent, awaiting response... 302 Found</font></div><div><font face="&#39;courier new&#39;, monospace" size="1">Location: /galaxy/root?app_action=data&amp;user_id=cc7ba224ab9e7b70&amp;app_name=igv_bam&amp;link_name=local_default&amp;action_param=galaxy_e2132aef71b11dbf.bam&amp;dataset_id=e2132aef71b11dbf [following]</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">--2012-06-22 13:58:00--  http://</font><span style="font-family:&#39;courier new&#39;,monospace;font-size:x-small"><a href="http://example.org">example.org</a></span><font face="&#39;courier new&#39;, monospace" size="1">/galaxy/root?app_action=data&amp;user_id=cc7ba224ab9e7b70&amp;app_name=igv_bam&amp;link_name=local_default&amp;action_param=galaxy_e2132aef71b11dbf.bam&amp;dataset_id=e2132aef71b11dbf</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">Reusing existing connection to </font><span style="font-family:&#39;courier new&#39;,monospace;font-size:x-small"><a href="http://example.org">example.org</a></span><font face="&#39;courier new&#39;, monospace" size="1">:80.</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">HTTP request sent, awaiting response... 200 OK</font></div><div><font face="&#39;courier new&#39;, monospace" size="1">Length: unspecified [text/html]</font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1">Saving to: &#39;galaxy_e2132aef71b11dbf.bam.1&#39;</font></div><div><font face="&#39;courier new&#39;, monospace" size="1"><br></font></div><div><font face="&#39;courier new&#39;, monospace" size="1">    [ &lt;=&gt;                                                                                                                             ] 27,581      --.-K/s   in 0s      </font></div>

<div><font face="&#39;courier new&#39;, monospace" size="1"><br></font></div><div><font face="&#39;courier new&#39;, monospace" size="1">2012-06-22 13:58:00 (146 MB/s) - &#39;galaxy_e2132aef71b11dbf.bam.1&#39; saved [27581]</font></div>

</div><div><br></div><div><div>Giving us a text/html page rather than the BAM file.</div><div><br></div><div>I see that I&#39;m not the first person to run into this: <a href="http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-December/007901.html">http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-December/007901.html</a> but I&#39;m still not really sure how to solve the problem.</div>

<div><br><div>I&#39;m no sysadmin, so my apache config skills are very patchy. My config is up at <a href="https://gist.github.com/2970592">https://gist.github.com/2970592</a>. Any help would be very much appreciated.</div>

</div><div><br></div><div>Rob Syme</div><div><br></div><div>PhD Student</div><div>Curtin University</div><div><br></div><div><br></div><div><br></div><div><br></div>
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