Yes, this is the case. I have: galaxy-dist/tools/${category}/BINARY galaxy-dist/tools/${category}/BINARY.xml Where BINARY.xml contains the <tool ...><command>BINARY... XML code. Is there a good way to see what Galaxy is exactly executing for the tool? I could not find a description on how to do that anywhere on the internet (*sigh* apparently one cannot find anything related to Galaxy, at least since the term Galaxy got "hijacked" by the smartphone of the same name ;). Thanks, Manuel ________________________________________ From: Björn Grüning [bjoern.gruening@pharmazie.uni-freiburg.de] Sent: Wednesday, April 10, 2013 11:37 PM To: Holtgrewe, Manuel Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] "Local install" of Galaxy Tool Hi Manuel, is your XML file also under ${galaxy_root}/tools/${category}/ ? It should be. Tata, Bjoern
Dear all, I am trying to follow the Admin Add Tool Tutorial [1]. I put my binary BINARY into the location ${galaxy_root}/tools/${category}/BINARY. However, it is not found using if the <command> tag looks as follows:
<command>BINARY (arguments)</command>
When I put the following, it works:
<command>$__root_dir__/tools/CATEGORY/BINARY</command>
Am I doing something wrong? Is there a preferable way to such a "local" installation than my second try?
Thanks! Manuel
[1] http://wiki.galaxyproject.org/Admin/Tools/Add%20Tool%20Tutorial ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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