Hi Quang, I didn't realize you were running on the cloud, which is not my area of expertise - my instructions were for a local Galaxy instance. I'll let others with more knowledge of the cloud environment answer your question. Please keep all replies on the mail list to enable optimal response to questions and issues. Greg Von Kuster On Dec 22, 2012, at 10:45 AM, Quang Trinh wrote:
Hi Greg, Quick question: I am running off Amazon EC2 and when I do the upgrade, I get the following error:
Not trusting file /mnt/galaxyTools/galaxy-central/.hg/hgrc from untrusted user galaxy, group galaxy Not trusting file /mnt/galaxyTools/galaxy-central/.hg/hgrc from untrusted user galaxy, group galaxy abort: repository default not found!
How do I get around this?
THanks,
On 12/22/12, Quang Trinh <quang.trinh@gmail.com> wrote:
Thanks Greg, will follow the instructions from the news brief.
Q
On Sat, Dec 22, 2012 at 10:14 AM, Greg Von Kuster <greg@bx.psu.edu> wrote:
Hi Quang,
You'll need to upgrade your Galaxy instance to the distribution release that went out on December 20. Here is the link to the news brief for the December 20 release.
http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20
From this point forward, all communication between Galaxy and the tool shed will be backward compatible to this December 20 release, so new tool shed features introduced in the future will function for any Galaxy instance running the December 20 release or newer.
Greg Von Kuster
On Dec 22, 2012, at 9:53 AM, Quang Trinh wrote:
Hi, Trying to install BWA from toolshed just now and I get these error messages ( see below ). Installing BWA from toolshed works for me before.
Thanks
Q
Server Error
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:206 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:1199 in
URL: http://54.242.71.44/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=25bdd3c7f0d57b06&changeset_revisions=ffa8aaa14f7c Module paste.exceptions.errormiddleware:143 in __call__ prepare_for_install
description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple ValueError: too many values to unpack
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