Hi Guys,
Our galaxy instance has been in use for a couple years but since Feb 2014 it started to show us some weird behavior. Recently the upload function suddenly stopped working properly. We are getting messages like the following. I'm not sure if this only happens to us. If someone has seen this before, please give me some hints.
P.S., I searched online and many says that this is because the browser does not wait till all the data from the server is received and closes the socket. However it happens both in firefox and chrome. I'm wondering if it is because galaxy has any change recently but when I do 'hg update stable' it reported that it is up to date.
Thanks! Rui
Error messages:
Exception happened during processing of request from ('127.0.0.1'----------------------------------------
Exception happened during processing of request from (, 52259'127.0.0.1', 52260)
Traceback (most recent call last):
)
Traceback (most recent call last):
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
----------------------------------------
Exception happened during processing of request from (----------------------------------------
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
Exception happened during processing of request from'127.0.0.1' , ('127.0.0.1'52264, 52262----------------------------------------
)
Exception happened during processing of request from ('127.0.0.1'----------------------------------------
, )
Traceback (most recent call last):
Traceback (most recent call last):
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
Exception happened during processing of request from 52261('127.0.0.1', ----------------------------------------
)Exception happened during processing of request from
Traceback (most recent call last):
52263('127.0.0.1')
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
Traceback (most recent call last):
, 52265)
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
Traceback (most recent call last):
File "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
self.finish_request(request, client_address)
self.finish_request(request, client_address)
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
127.0.0.1 - - [27/Feb/2014:16:59:36 -0700] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:20020/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:27.0) Gecko/20100101 Firefox/27.0"
self.RequestHandlerClass(request, client_address, self)
self.RequestHandlerClass(request, client_address, self)
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
self.RequestHandlerClass(request, client_address, self)
self.RequestHandlerClass(request, client_address, self)
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
self.finish()
self.RequestHandlerClass(request, client_address, self)
self.finish()
self.RequestHandlerClass(request, client_address, self)
self.finish()
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
self.RequestHandlerClass(request, client_address, self)
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
self.finish()
self.finish()
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
self.wfile.flush()
self.wfile.flush()
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
self.wfile.flush()
self.finish()
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
File "/usr/lib/python2.7/socket.py", line 303, in flush
File "/usr/lib/python2.7/socket.py", line 303, in flush
self.wfile.flush()
self.finish()
self.wfile.flush()
File "/usr/lib/python2.7/socket.py", line 303, in flush
self.wfile.flush()
File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
File "/usr/lib/python2.7/socket.py", line 303, in flush
File "/usr/lib/python2.7/socket.py", line 303, in flush
File "/usr/lib/python2.7/socket.py", line 303, in flush
self.wfile.flush()
File "/usr/lib/python2.7/socket.py", line 303, in flush
self._sock.sendall(view[write_offset:write_offset+buffer_size])
self._sock.sendall(view[write_offset:write_offset+buffer_size])
self._sock.sendall(view[write_offset:write_offset+buffer_size])
self._sock.sendall(view[write_offset:write_offset+buffer_size])
error: [Errno 32] Broken pipe
error: [Errno 32] Broken pipe
self._sock.sendall(view[write_offset:write_offset+buffer_size])
----------------------------------------
self._sock.sendall(view[write_offset:write_offset+buffer_size])
error: [Errno 32] Broken pipe
error: [Errno 32] Broken pipe
error: [Errno 32] Broken pipe
----------------------------------------
self._sock.sendall(view[write_offset:write_offset+buffer_size])
----------------------------------------
error: [Errno 32] Broken pipe
----------------------------------------
----------------------------------------
error: [Errno 32] Broken pipe
----------------------------------------