Hi Mic,

do you have Java installed?

cheers,
Bjoern

Am 17.11.2015 um 02:05 schrieb Mic:
> Hello,
> I installed FastQC (~/shed_tools/toolshed.g2.bx.psu.edu/repos/*devteam*
> /fastqc/*2d094334f61e*/
>
> *FastQC ).*
> However, I got the following error while running it:
>
>
> *Fatal error: Exit code 1 () Traceback (most recent call last): File
> "/home/lorencm/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/fastqc/rgFastQC.py
> <http://toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/fastqc/rgFastQC.py>",
> line 157, in <module> assert os.path.isfile(opts.executable),'##rgFastQC.py
> error - cannot find executable %s' % opts.executable AssertionError:
> ##rgFastQC.py error - cannot find executable /fastqc*
>
> The Fastqc package seems to be correctly installed:
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> *~/galaxy/tool_dependency/FastQC/0.11.2/devteam/package_fastqc_0_11_2/4b65f6e39cb0
>> ls -1 -ahltotal 824Kdrwxrwxr-x 8 lorencm lorencm 4.0K Nov  4 02:21
> .drwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 ..drwxrwxr-x 2 lorencm
> lorencm 4.0K Nov  4 02:21 Configuration-rwxrwxr-x 1 lorencm lorencm  251
> Nov  4 02:21 env.sh-rwxr-xr-x 1 lorencm lorencm  13K Nov  4 02:21
> fastqc-rw-rw-r-- 1 lorencm lorencm 2.2K Nov  4 02:21
> fastqc_icon.icodrwxrwxr-x 5 lorencm lorencm 4.0K Nov  4 02:21
> Help-rw-rw-r-- 1 lorencm lorencm 5.5K Nov  4 02:21 INSTALL.txt-rw-rw-r-- 1
> lorencm lorencm  49K Nov  4 02:21 jbzip2-0.9.jar-rw-rw-r-- 1 lorencm
> lorencm  35K Nov  4 02:21 LICENSE.txtdrwxrwxr-x 3 lorencm lorencm 4.0K Nov
> 4 02:21 netdrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 org-rw-rw-r-- 1
> lorencm lorencm 2.1K Nov  4 02:21 README.txt-rw-rw-r-- 1 lorencm lorencm
> 32K Nov  4 02:21 RELEASE_NOTES.txt-rw-rw-r-- 1 lorencm lorencm  101 Nov  4
> 02:21 run_fastqc.bat-rw-rw-r-- 1 lorencm lorencm 630K Nov  4 02:21
> sam-1.103.jardrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21
> Templatesdrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 uk*
> What do I miss out?
>
> Thank you in advance.
>
> Mic
>
>
>
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