6 Oct
2012
6 Oct
'12
6:31 p.m.
Hi all, if we try to wrap a single script-tool, for example bismark [1], it has its own version number and should be included in <version_command>. I would like to ship bismark with the wrapper. That means that bismark is not included in PATH, but exists next to the bismark_wrapper.xml file. That isn't a problem for the <command> tag, but for the <version_command> tag, because it assumes the executed tool in PATH. Attached is a patch that adds the same <command> logic to <version_command> if a interpreter is specified. Regards, Björn [1] http://www.bioinformatics.babraham.ac.uk/projects/bismark/