Hi Branden, <br><br>I find a wiki documentation here, <br> <br><a href="https://bitbucket.org/galaxy/galaxy-central/wiki/DataTables">https://bitbucket.org/galaxy/galaxy-central/wiki/DataTables</a><br><br>Hope this will help you to experiment a bit around. <br>

<div class="gmail_quote"><br>regards, Vipin<br><br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">

  
    
  
  <div bgcolor="#ffffff" text="#000000">
    Does anybody have any idea why I would be getting this error before
    the tool runs?<br>
    <br>
    --<br>
    Branden Timm<br>
    Great Lakes Bioenergy Research Center<br>
    <a href="mailto:btimm@wisc.edu" target="_blank">btimm@wisc.edu</a><div><div></div><div class="h5"><br>
    <br>
    On 4/19/2011 10:45 AM, Branden Timm wrote:
    </div></div><blockquote type="cite"><div><div></div><div class="h5">
      
      <div lang="x-western"> Hi All,<br>
          I&#39;m having issues running BWA for Illumina with the latest
        version of Galaxy (5433:c1aeb2f33b4a).<br>
        <br>
        It seems that the error is a python list error while preparing
        the job:<br>
        <span style="border-collapse: separate; color: rgb(0, 0, 0); font-family: &#39;Times New Roman&#39;; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; font-size: medium;"><span style="color: rgb(48, 48, 48);"><br>


          </span></span><span style="border-collapse: separate; color: rgb(0, 0, 0); font-family: &#39;Times New Roman&#39;; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; font-size: medium;"><span style="color: rgb(48, 48, 48);">
            <pre style="font-family: monospace; line-height: 10px; background-color: white; color: black; border: 1px dotted black; overflow: auto; padding: 10px;">Traceback (most recent call last):
  File &quot;/home/galaxy/galaxy-central/lib/galaxy/jobs/runners/local.py&quot;, line 58, in run_job
    job_wrapper.prepare()
  File &quot;/home/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py&quot;, line 371, in prepare
    self.command_line = self.tool.build_command_line( param_dict )
  File &quot;/home/galaxy/galaxy-central/lib/galaxy/tools/__init__.py&quot;, line 1575, in build_command_line
    command_line = fill_template( self.command, context=param_dict )
  File &quot;/home/galaxy/galaxy-central/lib/galaxy/util/template.py&quot;, line 9, in fill_template
    return str( Template( source=template_text, searchList=[context] ) )
  File &quot;/home/galaxy/galaxy-central/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py&quot;, line 1004, in __str__
    return getattr(self, mainMethName)()
  File &quot;DynamicallyCompiledCheetahTemplate.py&quot;, line 106, in respond
IndexError: list index out of range</pre>
          </span></span>I checked the bwa_index.loc file for errors, it
        seems that the line for the reference genome I&#39;m trying to map
        against is correct (all whitespace is tab characters):<br>
        synpcc7002      synpcc7002      Synechococcus  
        /home/galaxy/galaxy-central/bwa_<br>
        indices/SYNPCC7002<br>
        <br>
        I&#39;m not sure what the next troubleshooting step is, any ideas?<br>
        <br>
        --<br>
        Branden Timm<br>
        <a href="mailto:btimm@glbrc.wisc.edu" target="_blank">btimm@glbrc.wisc.edu</a><br>
      </div>
      </div></div><pre><fieldset></fieldset>
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    </blockquote>
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