Okay I gave that a try. Although it didn't succeed, the error has changed: (galaxyvenv)[galaxy@dirigo galaxy-dist]$ LIBTORQUE_DIR=/opt/torque/active/lib python scripts/scramble.py -e pbs_python fetch_one(): Using existing source, remove to download again: /nextgen3/galaxy/galaxy-dist-py27/scripts/scramble/archives/pbs_python-4.3.5.tar.gz unpack_source(): Removing old build directory at: /nextgen3/galaxy/galaxy-dist-py27/scripts/scramble/build/py2.7-linux-x86_64-ucs2/pbs_python unpack_source(): Unpacked to: /nextgen3/galaxy/galaxy-dist-py27/scripts/scramble/build/py2.7-linux-x86_64-ucs2/pbs_python copy_build_script(): Using build script /nextgen3/galaxy/galaxy-dist-py27/scripts/scramble/scripts/pbs_python.py run_scramble_script(): Beginning build run_scramble_script(): Executing in /nextgen3/galaxy/galaxy-dist-py27/scripts/scramble/build/py2.7-linux-x86_64-ucs2/pbs_python: /nextgen3/galaxy/galaxyvenv/bin/python scramble.py checking for pbs-config... /opt/torque/active/lib/../bin/pbs-config Found torque version: 4.2.7 checking for python... /nextgen3/galaxy/galaxyvenv/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/site-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/site-packages configure: creating ./config.status config.status: creating Makefile config.status: creating setup.py scramble(): Patching setup.py usage: scramble.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: scramble.py --help [cmd1 cmd2 ...] or: scramble.py --help-commands or: scramble.py cmd --help error: invalid command 'egg_info' Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/nextgen3/galaxy/galaxy-dist-py27/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/nextgen3/galaxy/galaxy-dist-py27/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for pbs_python 4.3.5

On 3/4/14, 9:51 AM, Nate Coraor wrote:

--

Pete Schmitt Technical Director: Discovery Cluster NH INBRE Grid Computational Genetics Lab Institute for Quantitative Biomedical Sciences Dartmouth College, HB 6203 L12 Berry/Baker Library Hanover, NH 03755 Phone: 603-646-8109 http://discovery.dartmouth.edu http://columbia.dartmouth.edu/grid http://www.epistasis.org http://iQBS.org