I got this error which executing tophat2 in Galaxy:<div><br></div><div><pre style="line-height:10px;background-color:rgb(255,255,255);border:1px dotted black;overflow:auto;padding:10px">Error in tophat:

[2013-02-13 02:02:43] Beginning TopHat run (v2.0.7)
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[2013-02-13 02:02:43] Checking for Bowtie
		  Bowtie version:	 2.0.6.0
[2013-02-13 02:02:43] Checking for Samtools
		Samtools version:	 0.1.18.0
[2013-02-13 02:02:43] Checking for Bowtie index files
Error: Could not find Bowtie 2 index files (/data/bowtie2-2.0.6/hg19/Homo_sapiens/Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/.*.bt2)</pre><pre style="background-color:rgb(255,255,255);border:1px dotted black;overflow:auto;padding:10px">
<span style="line-height:14px;color:rgb(48,48,48);font-family:&#39;Lucida Grande&#39;,verdana,arial,helvetica,sans-serif;font-size:12px;white-space:normal">The tool produced the following additional output:</span><pre style="line-height:10px;border:1px dotted black;overflow:auto;padding:10px">
TopHat v2.0.7
tophat2 -p 4  /data/bowtie2-2.0.6/hg19/Homo_sapiens/Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/ /opt/galaxyprod/galaxy-dist/database/files/000/dataset_197.dat</pre><pre style="line-height:10px;border:1px dotted black;overflow:auto;padding:10px">
I have these files under the Index directory:</pre><pre style="border:1px dotted black;overflow:auto;padding:10px"><span style="line-height:10px">genome.1.bt2  genome.2.bt2  genome.3.bt2  genome.4.bt2  genome.fa  genome.rev.1.bt2  genome.rev.2.bt2  tophat_out</span></pre>
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