Hi Philipe,

Unfortunately, the velvet wrappers in the toolshed seem to be very specific to a certain compilation of velvet. You'll need to recompile Velvet locally with the same settings. I think it needs CATEGORIES=5 in the make command for velvet.

Hope this helps,

Simon Gladman
VBC - Monash University &
Victorian Life Sciences Computation Initiative

On Thursday, 8 November 2012, Philipe Moncuquet <philippe.mcqt@gmail.com> wrote:
> Thanks for the tip. I have already done this but not via galaxy toolshed (always good to learn new stuff). I didn't get any answers so far, so I hoped to be luckier on the dev list.
> Thanks again for quick reply.
>
> 2012/11/8 Greg Von Kuster <greg@bx.psu.edu>
>>
>> Hi Phillippe,
>> You may have better luck in getting a response to this if you contact the owner of the repository you installed from the tool shed. See this wiki page for details on how to do this.
>> http://wiki.galaxyproject.org/ToolShedRepositoryFeatures#Contacting_the_owner_of_a_repository
>> Greg Von Kuster
>>
>> On Nov 7, 2012, at 6:29 PM, Philipe Moncuquet wrote:
>>
>> Hi developers,
>> We have our own instance running and under continuoius development.
>> I installed velvetg and velveth from the toolshed (revision 0:4afe13ac23b6) and manually installed binaries for velvet_1.2.08.
>> When I try to test it under the galaxy web interface, the job does not failed but all files are empty except the first one that contains the following error message :
>>
>> [0.000000] Unknown option: -ins_length3
>>
>> I guess this might come from the version of the binaries and the version the xml wrapper was written for are different. Does anyone knows which binaries version I should use ?
>>
>> How is it that the job does not appears as failed ? Any help will greatly appreciated.
>>
>> Regards,
>>
>> Philippe
>>
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>