I am attempting to do a local install of Galaxy using the galaxy-dist source. While testing some of the the tools I have run into a problem with the laj Pairwise Alignment Viewer tool. I have also tested this on the test server http://test.g2.bx.psu.edu/ and I am getting a very similar error.

Traceback (most recent call last):

File "/var/opt/galaxy/g2test/galaxy_test/lib/galaxy/jobs/runners/pbs.py", line 514, in finish_job

pbs_job_state.job_wrapper.finish( stdout, stderr )

File "/var/opt/galaxy/g2test/galaxy_test/lib/galaxy/jobs/__init__.py", line 630, in finish

tool=self.tool, stdout=stdout, stderr=stderr )

File "/var/opt/galaxy/g2test/galaxy_test/lib/galaxy/tools/__init__.py", line 1664, in call_hook

return code( *args, **kwargs )

File "./tools/visualization/LAJ_code.py", line 24, in exec_after_process

elif name == "repeatfile" and data.state == data.states.OK and data.has_data():

AttributeError: ('E', 'r', 'r', 'o', 'r', ' ', 'i', 'n', ' ', "'", 'L', 'A', 'J', "'", ' ', 'h', 'o', 'o', 'k', ' ', "'", 'e', 'x', 'e', 'c', '_', 'a', 'f', 't', 'e', 'r', '_', 'p', 'r', 'o', 'c', 'e', 's', 's', "'", ',', ' ', 'o', 'r', 'i', 'g', 'i', 'n', 'a', 'l', ' ', 'm', 'e', 's', 's', 'a', 'g', 'e', ':', ' ', "'", 'N', 'o', 'n', 'e', 'T', 'y', 'p', 'e', "'", ' ', 'o', 'b', 'j', 'e', 'c', 't', ' ', 'h', 'a', 's', ' ', 'n', 'o', ' ', 'a', 't', 't', 'r', 'i', 'b', 'u', 't', 'e', ' ', "'", 's', 't', 'a', 't', 'e', "'")

Traceback (most recent call last):
  File "/storage/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 125, in run_job
    job_wrapper.finish( stdout, stderr )
  File "/storage/galaxy-dist/lib/galaxy/jobs/__init__.py", line 630, in finish
    tool=self.tool, stdout=stdout, stderr=stderr )
  File "/storage/galaxy-dist/lib/galaxy/tools/__init__.py", line 1632, in call_hook
    return code( *args, **kwargs )
  File "./tools/visualization/LAJ_code.py", line 24, in exec_after_process
    elif name == "repeatfile" and data.state == data.states.OK and data.has_data():
AttributeError: ('E', 'r', 'r', 'o', 'r', ' ', 'i', 'n', ' ', "'", 'L', 'A', 'J', "'", ' ', 'h', 'o', 'o', 'k', ' ', "'", 'e', 'x', 'e', 'c', '_', 'a', 'f', 't', 'e', 'r', '_', 'p', 'r', 'o', 'c', 'e', 's', 's', "'", ',', ' ', 'o', 'r', 'i', 'g', 'i', 'n', 'a', 'l', ' ', 'm', 'e', 's', 's', 'a', 'g', 'e', ':', ' ', "'", 'N', 'o', 'n', 'e', 'T', 'y', 'p', 'e', "'", ' ', 'o', 'b', 'j', 'e', 'c', 't', ' ', 'h', 'a', 's', ' ', 'n', 'o', ' ', 'a', 't', 't', 'r', 'i', 'b', 'u', 't', 'e', ' ', "'", 's', 't', 'a', 't', 'e', "'")

Any help would be appreciated,

--

Jason Ellul
Bioinformatician
Cancer Research Division

Peter MacCallum Cancer Centre
TEL: +61 3 9656 1512
FAX: +61 3 9656 1411
EMAIL: jason.ellul@petermac.org

Address: St Andrew's Place East Melbourne Victoria 3002 Australia
Postal Address: Locked Bag No. 1 A'Beckett St., Victoria, 8006, Australia

This email (including any attachments or links) may contain
confidential and/or legally privileged information and is
intended only to be read or used by the addressee. If you
are not the intended addressee, any use, distribution,
disclosure or copying of this email is strictly
prohibited.
Confidentiality and legal privilege attached to this email
(including any attachments) are not waived or lost by
reason of its mistaken delivery to you.
If you have received this email in error, please delete it
and notify us immediately by telephone or email. Peter
MacCallum Cancer Centre provides no guarantee that this
transmission is free of virus or that it has not been
intercepted or altered and will not be liable for any delay
in its receipt.