ls lib/galaxy/tools/toolbox/filters/examples.py*
Hi John The problem is the same with galaxy 16.01. lib/galaxy/tools/toolbox/filters/examples.py lib/galaxy/tools/toolbox/filters/examples.py.sample but when I click on "Manage your ToolBox filters" (/user/toolbox_filters?cntrller=user) in my User preferences panel, I'm still facing this error : URL: http://galaxy.biogemma.fr/user/toolbox_filters?cntrller=user sys.path: [ '/softs/bioinfo/galaxy-prod/scripts', '/softs/bioinfo/galaxy-prod/lib', '/softs/bioinfo/galaxy-prod/.venv/lib/python27.zip', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7/plat-linux2', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7/lib-tk', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7/lib-old', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7/lib-dynload', '/softs/add-ons/anaconda-2.3.0/lib/python2.7', '/softs/add-ons/anaconda-2.3.0/lib/python2.7/plat-linux2', '/softs/add-ons/anaconda-2.3.0/lib/python2.7/lib-tk', '/softs/bioinfo/galaxy-prod/.venv/lib/python2.7/site-packages'] Module galaxy.web.framework.middleware.error:151 in __call__
app_iter = self.application(environ, sr_checker) Module paste.recursive:85 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:163 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:640 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:131 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:189 in handle_request body = method( trans, **kwargs ) Module galaxy.web.framework.decorators:65 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.user:1331 in toolbox_filters tool_filters = get_filter_mapping( saved_user_tool_filters, trans.app.config.user_tool_filters ) Module galaxy.webapps.galaxy.controllers.user:1284 in get_filter_mapping module = __import__( module_name, globals(), fromlist=['temp_module'] ) ImportError: No module named examples
ls lib/galaxy/tools/toolbox/filters/examples.py*
The paster.log shows : Error - <type 'exceptions.ImportError'>: No module named examples Do you have any idea ? Thank you. Fred -----Message d'origine----- De : SAPET, Frederic Envoyé : jeudi 3 mars 2016 09:10 À : 'John Chilton' <jmchilton@gmail.com> Cc : galaxy-dev@lists.galaxyproject.org Objet : RE: [galaxy-dev] Tool Visibility feature Hi John Yes, I have do that : lib/galaxy/tools/toolbox/filters/examples.py lib/galaxy/tools/toolbox/filters/examples.py.sample I'm currently trying to set up another galaxy server, I will try Galaxy 16.01 with this functionality. Thank you for the wiki. Fred -----Message d'origine----- De : John Chilton [mailto:jmchilton@gmail.com] Envoyé : mercredi 2 mars 2016 21:20 À : SAPET, Frederic <frederic.sapet@biogemma.com> Cc : galaxy-dev@lists.galaxyproject.org Objet : Re: [galaxy-dev] Tool Visibility feature I have fixed the path to the filter directory on the wiki, have you copied lib/galaxy/tools/toolbox/filters/examples.py.sample to lib/galaxy/tools/toolbox/filters/examples.py? -John On Fri, Feb 19, 2016 at 4:22 PM, SAPET, Frederic <frederic.sapet@biogemma.com> wrote:
Hello
I'm trying to set up this feature : https://wiki.galaxyproject.org/Admin/Config/Access%20Control
it seems that some files have been moved from : lib/galaxy/tools/filters/ to lib/galaxy/tools/toolbox/filters/
by the way, when I uncomment " user_tool_filters = examples:restrict_upload_to_admins, examples:restrict_encode" in my galaxy.ini file, it does not work.
When I click on "Manage your ToolBox filters" (/user/toolbox_filters?cntrller=user) in my User preferences panel, I'm facing this error :
Internal Server Error Galaxy was unable to successfully complete your request
URL: http://galaxy.biogemma.fr/user/toolbox_filters?cntrller=user sys.path: [ '/softs/bioinfo/galaxy-prod/eggs/Parsley-1.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Fabric-1.7.0-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/ssh-1.7.14-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/paramiko-1.11.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/SVGFig-1.1.6-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/drmaa-0.7.6-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Whoosh-2.4.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Beaker-1.4-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/MySQL_python-1.2.3c1_5.1.41_static-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/sqlalchemy_migrate-0.9.6-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Tempita-0.5.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/decorator-3.1.2-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/sqlparse-0.1.14-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/six-1.9.0-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Babel-1.3-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/pytz-2013.9-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/mercurial-3.2.4-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/Mako-0.4.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/kombu-3.0.24-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/ordereddict-1.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/importlib-1.0.3-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/anyjson-0.3.3-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/PyYAML-3.10-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/WebHelpers-1.3-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/pycrypto-2.5-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/python_lzo-1.08_2.03_static-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/numpy-1.6.0-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/bx_python-0.7.2-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/SQLAlchemy-1.0.8-py2.6-linux-x86_64-ucs4.egg', '/softs/bioinfo/galaxy-prod/eggs/WebOb-0.8.5-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Routes-2.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/repoze.lru-0.6-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/amqp-1.4.6-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/wchartype-0.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/docutils-0.7-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/PasteDeploy-1.5.0-py2.6.egg', '/softs/bioinfo/galaxy-prod/eggs/Paste-1.7.5.1-py2.6.egg', '/softs/bioinfo/galaxy-prod/lib', '/usr/lib/python2.6/site-packages/pip-7.1.2-py2.6.egg', '/usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg', '/usr/lib/python2.6/site-packages/bz2file-0.98-py2.6.egg', '/usr/lib64/python26.zip', '/usr/lib64/python2.6', '/usr/lib64/python2.6/plat-linux2', '/usr/lib64/python2.6/lib-tk', '/usr/lib64/python2.6/lib-old', '/usr/lib64/python2.6/lib-dynload', '/usr/lib64/python2.6/site-packages/gtk-2.0', '/usr/lib64/python2.6/site-packages', '/usr/lib/python2.6/site-packages'] Module galaxy.web.framework.middleware.error:151 in __call__
app_iter = self.application(environ, sr_checker) Module paste.recursive:84 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:143 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:633 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:133 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:191 in handle_request body = method( trans, **kwargs ) Module galaxy.web.framework.decorators:68 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.user:1331 in toolbox_filters tool_filters = get_filter_mapping( saved_user_tool_filters, trans.app.config.user_tool_filters ) Module galaxy.webapps.galaxy.controllers.user:1284 in get_filter_mapping module = __import__( module_name, globals(), fromlist=['temp_module'] ) ImportError: No module named examples
Could you please provide me some help ? I have launched a git pull origin master before testing...
Thank you.
Fred
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/