Dear All,

 

We have had a working local galaxy instance being used with mySQL for almost two years with a lot of new scripts, workflows built-in and datasets still associated with it. 

 

We now would like to move to a new server but rather than start from scratch, would like to move all parts of current instance as is first. 

 

We ran deploy_galaxy.sh of galaxy-admin-utils-master, modifying “hg clone to point to our current instance”.

As it copied the virtual environment details also, I expected to be able to run start_galaxy.sh without requiring new eggs to be compiled.

 

Where did I go wrong. Is it always required to re-compile them? Or is there a way to copy the missing eggs.

 

Please advise.

 

Error last few lines:

Traceback (most recent call last):

  File "./scripts/fetch_eggs.py", line 37, in <module>

    c.resolve() # Only fetch eggs required by the config

  File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve

    egg.resolve()

  File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve

    return self.version_conflict( e.args[0], e.args[1] )

  File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict

    r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch )

  File "/home/ocimum/GalaxyMigrated/galaxy_venv/local/lib/python2.7/site-packages/distribute-0.6.24-py2.7.egg/pkg_resources.py", line 584, in resolve

    raise DistributionNotFound(req)

pkg_resources.DistributionNotFound: numpy==1.6.0

Fetch failed.

 

Regards,

Madhuri

 

 


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