On Fri, Aug 1, 2014 at 12:32 PM, Dooley, Damion <Damion.Dooley@bccdc.ca> wrote:

Hi folks,

Having a difficult time with coding the "configure" step in this new tool_dependency.xml file, namely that an error "/bin/sh: configure: command not found" results when I try to install my beta development tool from a local test toolshed (which is downloading and installing other tools just fine).

<actions>
<action type="shell_command">git clone https://github.com/myuser/mygitstuff.git .</action>
<action type="shell_command">git reset --hard 1819482db93bf0025c2588b5264cc0ec8c61029c</action>
<action type="shell_command">configure --disable-gui --prefix=$INSTALL_DIR</action>
<action type="make_install"></action>
<action type="move_directory_files">
<source_directory>bin</source_directory>
<destination_directory>$INSTALL_DIR/bin</destination_directory>
</action>
<action type="set_environment">
<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
</action>
</actions>

Any hints about why this isn't being found or what the /bin/sh needs to get it going?
When I do a git reset --hard, the "configure" file is definitely there, with executable flag set. Any other permission oddities?

I've also tried <action type="autoconf"></action> , which yeilds same error. (Skipping that line and doing <action type="make_install"></action> at least finds and runs "make", though it errors out for lack of input data).

Regards,

Damion

Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control
655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada

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