thanx Mina, I thought about this. If no one still did this, question is where to add soft link creation.

Probably in flexbar.xml. Now flexbar supports fasta and fastaq format, also their gziped/bziped versions.

How to determine data format in Galaxy? I'm not an expert neither in Galaxy nor biology, just try to administrate

Galaxy instance.

Thanx,

Nikolaos

On Sat, Jun 18, 2016 at 2:54 PM, Mina Bashir <mina.bashir@medunigraz.at> wrote:

Hi,
You can solve the extension issue using soft links in your tool wrapper.
E.g.:
ln -s $input_fasta $input_fasta.fna

Best,
Mina

Sent from my iPhone

> On Jun 18, 2016, at 12:04, Nikolaos Tur <nikolaos.tur@gmail.com> wrote:
>
> Hi,
>
> does someone use latest version of flexbar 2.7 with Galaxy? It seems newest flexbar changes way how it works with data. Now it requires format extension for data. But Galaxy operates data with .dat extension in database/files/.
> Also there is flexbar wrapper for version 2.7, so it should be somehow integrated to the Galaxy. Our Galaxy is 16.04.
>
> Thanx,
> Nikolaos

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