On Jan 4, 2012, at 6:44 PM, Ryan Golhar wrote:
> On Wed, Jan 4, 2012 at 5:17 PM, Ryan Golhar <
ngsbioinformatics@gmail.com> wrote:
> I'm adding Data Libraries to my local galaxy instance. I'm doing this by importing directories that contain bam and bai files. I see the bam/bai files get added on the admin page and the Message is "This job is running". qstat shows the job run and complete. I checked my runner0.log and it registers the PBS job completed successfully. But the web page never updates. I tried to refresh the page by navigating away from it then back to it, but it still reads "This job is running". How do I fix this?
>
> Some more information...I check my head node and I see samtools is running there. Its running 'samtools index'. So two problems:
>
> 1) samtools is not using the cluster. I assume this is a configuration setting somewhere.