Peter, You are correct, that is related to the issue described in the following trello card: https://trello.com/c/KdGX3hkh We are looking into a fix for that behavior, and I'll keep you posted. --Dave B. On 4/23/13 10:11:59.000, Peter Cock wrote:
Hi all,
I'm seeing a unit test failure on the Tool Shed which I think is in some way related to the blast_datatypes dependency not refreshing the list of available file formats:
http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
Revision: 7:a7add03a44fd - blastxml_to_top_descr v0.0.6
Tool shed version: 9471:ae53deed05b6 Galaxy version: 9505:1e3d92ec22b2
Traceback (most recent call last): File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/test/functional/test_toolbox.py", line 171, in test_tool self.do_it( td, shed_tool_id=shed_tool_id ) File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/test/functional/test_toolbox.py", line 43, in do_it shed_tool_id=shed_tool_id ) File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/test/base/twilltestcase.py", line 193, in upload_file self.refresh_form( "file_type", ftype ) #Refresh, to support composite files File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/test/base/twilltestcase.py", line 1276, in refresh_form tc.fv( f.name, control.name, value ) File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/eggs/twill-0.9-py2.7.egg/twill/commands.py", line 450, in formvalue set_form_control_value(control, value) File "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-main-tool-shed-py27/build/eggs/twill-0.9-py2.7.egg/twill/utils.py", line 190, in set_form_control_value raise ClientForm.ItemNotFoundError('cannot find value/label "%s" in list control' % (val,)) ItemNotFoundError: cannot find value/label "blastxml" in list control
This bug reminds me of something recently discussed on the list, but I can't find the thread (perhaps it was another file format). So there may already be a Trello issue open for this.
Thanks,
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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