On Wed, Jan 20, 2016 at 2:22 PM, Floreline TOUCHARD
<
floreline.touchard@gmail.com> wrote:
Thanks for the answer !
I compared the two versions of tools. It does not seem to be any major
differences indeed. I added these tools to my instance successfully.
Great :)
Additional options in version 6 are not to be integrate to my Galaxy
instance immediately. I will update my XML file later if need arises. The
old wrappers are perfect for the moment.
If you have any feedback on the IUC work, please comment on the
GitHub issue.
For the NCBI BLAST+ suite I would like to select multiple databases only
from the *.loc files. There is no spaces in the paths in my *.loc files
(however there is spaces in the names of these databases, but I guess this
is not a problem). I thought I just have to add a tag "multiple=true" in the
XML file but it seems a bit more complex. Am I missing something ?
As far as I know, the multiple="true" tag only works on input datasets
from your history. But that would make sense... I don't think I have
ever tried this.
Even if that worked, the <command> tag would also need modifying
to account for the multiple values from db_opts.database.
Another potential option is to extend makeblastdb which can in
principle combine multiple FASTA and pre-existing databases...
Peter
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/