Dear Nicola,


now it looks like package_gnu_coreutils_8_22

is generating an error



gnu_coreutils8.22packageErrorShutting down process id 23231 because it generated no output for the defined timeout period of 3600.0 seconds.





I didn't find anything an this error on the web and I am not sure how I can fix this...


cheers,


philipp 

-----Original message-----
From: Nicola Soranzo <nsoranzo@tiscali.it>
Sent: Wednesday 23rd March 2016 12:49
To: Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de>; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] perl version 5.18.1 repository error

Hi Philipp,
can you try to reinstall the tool dependency? Go to the Admin interface, "Manage installed tools", click on the "package_perl_xml_parser_expat_2_41", then from the "Repository Actions" menu select "Manage tool dependencies", select the dependency in error and "Uninstall", then select it again and "Install" it.

Cheers,
Nicola

On 23/03/16 08:06, Rathert, Philipp, Dr. wrote:

Dear all,


i am trying to install  tool (meme-fimo) which needs package_perl_xml_parser_expat_2_41 that has a pearl 5.18.1 dependency.


however, although the tool installs just fine it shows that package_perl_xml_parser_expat_2_41 has missing dependencies:


package_perl_xml_parser_expat_2_41
1ce3818a8eb9
Error
Error installing tool dependency perl version 5.18.1: Unable to locate the repository directory for revision d905bb415eca of installed repository package_perl_5_18 owned by iuc.
././tool_deps/perl/5.18.1/iuc/package_perl_xml_parser_expat_2_41/1ce3818a8eb9

Is this an error of my local instance or is the revision missing on the toolshed?

Thank you very much for your help.

Cheers,

philipp 




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