Hello,

I am trying to use IGV on local Galaxy to view BED and other kinds of files.

I added the xml file and made changes in the datatypes_conf.xml file too but the error says:

  
    Unable to parse header with error: File not found:..for input source..

The same file works for IGB though.

Please suggest the correct settings for this case.

Best regards,

Menorca
  

Hello -

I am wanting to be able to display bed files from Galaxy in IGV.  I have 
created a bed.xml display application description, and edited the 
datatypes_conf.xml to enable the igv display of datasets of bed format.

However, when I select the link in Galaxy to "Display with IGV local" I 
get the following error message in Galaxy:

You must import this dataset into your current history before you can 
view it at the desired display application.

I am attaching my bed.xml file I created based off of existing IGV 
display types.  I was hoping someone either has a working display 
descriptors for bed files for IGV, or might know what my error is.

Thanks much,

Ann
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