On Mon, Jun 17, 2013 at 5:44 PM, Patel, Viren <vcpatel@emory.edu> wrote:
Hello. I have installed Galaxy and run it successfully. Now I am trying to configure it to use DRMAA job runner. I created a job_conf.xml file as explained in the Galaxy wiki:
<?xml version="1.0"?> <job_conf> <plugins> <plugin id="sge" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="4"/> </plugins> <destinations default="sge_default"> <destination id="sge_default" runner="drmaa"/> </destinations> </job_conf>
I think you are missing the handlers configuration section. Assuming you are using only one server called main([server:main] in 'universe_wsgi.ini') you should use something like this: <?xml version="1.0"?> <job_conf> <plugins> <plugin id="sge" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="4"/> </plugins> <handlers default="handlers"> <!-- Additional job handlers - the id should match the name of a [server:<id>] in universe_wsgi.ini. --> <handler id="main" tags="handlers"/> </handlers> <destinations default="sge_default"> <destination id="sge_default" runner="drmaa"/> </destinations> </job_conf> The wiki[1] doesn't include the 'handlers' section in the examples. I personally prefer starting from the supplied sample file('job_conf.xml.sample_advanced'). [1]http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster Hope it helps, Carlos