Hi Greg,

   Thanks for the feedback. I cannot seem to find information for hmmdb.loc.  When I look in the associated xml file it looks like it could be removed completely (does one need a precompiled HMM Database? I do not remember using anything like this when I run hmmer on the commandline).  I have less experience with changing wrappers, etc. Have you tried just commenting this part out?  And do I need to start the instance over to test it?

Thanks in advance!

- Karen

    <conditional name="hmmdb">

        <param name="select" type="select" label="HMM Db">

          <option value="db" selected="True">Precompiled HMM Database</option>

          <option value="user">HMM Database in your History</option>

        </param>

        <when value="db">

            <param name="file" type="select" label="Precompiled HMM database">

                <options from_file="hmmdb.loc">

                    <column name="name" index="1"/>

                    <column name="value" index="2"/>

                </options>

            </param>

        </when>

        <when value="user">

            <param name="file" type="data" format="hmmer" label="HMM database" />

        </when>

    </conditional>