How did you try to remove the tool?  Do you mean that you used the Galaxy Admin UI to Uninstall the repository?   The datatypes are defined in a file named datatypes_conf.xml in the installed gmap repository.  Assuming you can uninstall this repository, doing so will eliminate this problem.  

I do not recommend nuking tables.  If you manually deleted rows from your database tables, you may have caused problems with your environment that could render it un-useable.


On Jul 11, 2012, at 6:46 PM, Anthonius deBoer wrote:

Hi,

I had some more bad luck trying to install the GMAP stuff from the TOOLSHEd but revision 10 is broken since it does not allow you to select a section and just stores the programs in the main tree...

But when I tried to remove the tool I got the following error for every run, since the sniffers where still looking for a module called GMAP...

Which table should I nuke to get rid of this association? Where are the datatype associations stored?
There does not seem to be an XML file for this, so I hope i can just remove some lines from the postgres database table but there are no obvious table names I can find...

WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:IntervalAnnotation' to sniff_order: No module named g!
 map
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:SpliceSiteAnnotation' to sniff_order: No module named gmap
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:IntronAnnotation' to sniff_order: No module named gmap
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:SNPAnnotation' to sniff_order: No module named gmap
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:IntervalAnnotation' to sniff_order: No module named gmap
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:SpliceSiteAnnotation' to sniff_order: No module named gmap
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:IntronAnnotation' to sniff_order: No module named gmap 
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.gmap:SNPAnnotation' to sniff_order: No module named gmap

Thanks 
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