Hi peter,

I've been working on this in the past but got caught up in other projects. There's work for a server-side component here (maybe 50% done), the client side stuff could all be done through collectl but I was having issues actually collecting collectl data that had put the project on hold temporarily.


I'd be very, very interested in finishing this project up.


On 02/21/2016 11:13 PM, Peter van Heusden wrote:
Hi there

We're researching the resource (CPU time and memory) requirements for RNA STAR at the moment. Specifically, we'd like to build up a database of input size to resource usage so that we can use this to feed a dynamic destination mapper (currently our STAR configuration uses a thumbsuck for RAM and CPU requirements that is not optimal but works in many cases).

Has anyone collected these metrics before? And more generally, is anyone collecting metrics for a range of bioinformatics tools? A database like this could be very useful!


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Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
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